{"id":216,"date":"2024-05-06T18:05:12","date_gmt":"2024-05-06T18:05:12","guid":{"rendered":"https:\/\/sites.wp.odu.edu\/awolter\/?page_id=216"},"modified":"2024-07-05T00:52:58","modified_gmt":"2024-07-05T00:52:58","slug":"bioinformatics","status":"publish","type":"page","link":"https:\/\/sites.wp.odu.edu\/awolter\/bioinformatics\/","title":{"rendered":"Bioinformatics"},"content":{"rendered":"<nav class=\"is-responsive wp-block-navigation is-layout-flex wp-block-navigation-is-layout-flex\" aria-label=\"Top\"  \t\t\tdata-wp-interactive \t\t\tdata-wp-context='{\"core\":{\"navigation\":{\"overlayOpenedBy\":[],\"type\":\"overlay\",\"roleAttribute\":\"\",\"ariaLabel\":\"Menu\"}}}' \t\t><button aria-haspopup=\"true\" aria-label=\"Open menu\" class=\"wp-block-navigation__responsive-container-open \"  \t\t\tdata-wp-on--click=\"actions.core.navigation.openMenuOnClick\" \t\t\tdata-wp-on--keydown=\"actions.core.navigation.handleMenuKeydown\" \t\t><svg width=\"24\" height=\"24\" 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href=\"https:\/\/sites.wp.odu.edu\/awolter\/portfolio\/splign\/\" data-type=\"link\" data-id=\"https:\/\/sites.wp.odu.edu\/awolter\/portfolio\/splign\/\">silkworm cDNA<\/a><\/em><\/p>    <hr class=\"wp-block-separator has-alpha-channel-opacity\" \/>    <p>Galaxy<\/p>    <p><em><a href=\"https:\/\/sites.wp.odu.edu\/awolter\/portfolio\/de-novo-transcriptome-reconstruction-with-rna-seq-using-galaxy\/\" data-type=\"link\" data-id=\"https:\/\/sites.wp.odu.edu\/awolter\/portfolio\/de-novo-transcriptome-reconstruction-with-rna-seq-using-galaxy\/\">De Novo transcriptome reconstruction with RNA-Seq using Galaxy\u00a0<\/a><\/em><\/p>    <p><em>Determining Exon and CpG intersections using IGV and Galaxy<\/em><\/p>    <p><\/p>    <hr class=\"wp-block-separator has-alpha-channel-opacity\" \/>    <p>UCSC <\/p>    <p><em>Determining transcription activity via epigenetic modification expression in a certain cell type (UCSC and IGV)<\/em><\/p>    <p><\/p>    <h2 class=\"wp-block-heading\">Command line Tools<\/h2>    <hr class=\"wp-block-separator has-alpha-channel-opacity\" \/>    <p>Bedtools<\/p>    <hr class=\"wp-block-separator has-alpha-channel-opacity\" \/>    <p><\/p>    <h2 class=\"wp-block-heading\">Python<\/h2>    <p><\/p>    <p><\/p> ","protected":false},"excerpt":{"rendered":"<p>Applications GLIMMER Splign silkworm cDNA Galaxy De Novo transcriptome reconstruction with RNA-Seq using Galaxy\u00a0 Determining Exon and CpG intersections using IGV and Galaxy UCSC Determining transcription activity via epigenetic modification expression in a certain cell type (UCSC and IGV) Command line Tools Bedtools Python<\/p>\n","protected":false},"author":28160,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"template-fullwidth.php","meta":{"footnotes":""},"_links":{"self":[{"href":"https:\/\/sites.wp.odu.edu\/awolter\/wp-json\/wp\/v2\/pages\/216"}],"collection":[{"href":"https:\/\/sites.wp.odu.edu\/awolter\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/sites.wp.odu.edu\/awolter\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/sites.wp.odu.edu\/awolter\/wp-json\/wp\/v2\/users\/28160"}],"replies":[{"embeddable":true,"href":"https:\/\/sites.wp.odu.edu\/awolter\/wp-json\/wp\/v2\/comments?post=216"}],"version-history":[{"count":4,"href":"https:\/\/sites.wp.odu.edu\/awolter\/wp-json\/wp\/v2\/pages\/216\/revisions"}],"predecessor-version":[{"id":264,"href":"https:\/\/sites.wp.odu.edu\/awolter\/wp-json\/wp\/v2\/pages\/216\/revisions\/264"}],"wp:attachment":[{"href":"https:\/\/sites.wp.odu.edu\/awolter\/wp-json\/wp\/v2\/media?parent=216"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}